Parallel Computing

1. D. Tossinelli, Y.-H. Tang, K. Lykov, D. Alexeev, M. Beraschi, P. Hadjidoukas, M. Bisson, W. Joubert, C. Cont and G.E. Karniadakis, "The In-Silico Lab-on-a Chip: Petascale and High-Throughput Simulations of Microfluidics at Cell Resolution ,"  DOI: 10.1145/2807591.2807677
   
   
2. P. Perdikaris, J.A. Insley, L. Grinberg, Y. Yu, M.E. Paka and G.E. Karniadakis, Visualizing multiphysics, fluid-structure interaaction phenomena in intracranial aneurysm, Parallel Computing, pages 1-8, 2015, doi:10.1016/j.parco.2015.10.
   
   
3. Y-H. Tang, S. Kudo, X. Bian, Z. Li and G.E. Karniadakis, "Multiscale universal interface: A concurrent framework for coupling heterogeneous solvers," J. Comp. Phys., 297, 13-31, 2015.
   
   
4. L. Grinberg, J. Insley, D. Fedosov, V. Morozov, M. Papka and G.E. Karniadakis, "Tightly coupled atomistic-continuum simulatins of brain blood flow on petaflop supercomputers," Computing in Sciences and Engineering, 14(6), 58-67, 2012.
   
   
5. L. Grinberg and G.E. Karniadakis, "A new domain decomposition method with overlapping patches for ultrascale simulations: Application to biological flows," J. Comp. Phys. 229, 5541-5563, 2010.
   
   
6. L. Grinberg, D. Pekurovsky, S. Sherwin and G. E. Karniadakis, "Parallel performance of the coarse space linear vertex solver  and low energy basis preconditioner for spectral/hp elements," Parallel Computing,. 35, . 284-304, 2009.
   
   
7. L. Grinberg and G.E. Karniadakis, "A scalable domain decomposition method for  ultra-parallel arterial flow simulations," Commun. Comput. Phys., 4, 1151-1169, 2008.
   
   
8. S. Dong, J. Insley, N.T. Karonis, M. Papka, J. Binns and G.E.  Karniadakis, "Simulating and visualizing the human  arterial system on the  TeraGrid," Future Generation Computer Systems,  The International Journal  of Grid Computing: Theory, Methods and Applications, 22, 1011- 1017, 2006.
   
   
9. S. Dong, G.E. Karniadakis, N.T. Karonis, ''Cross-site computations on the TeraGrid,'' Computing in Science and Engineering, vol. 7(5), pp. 14-23, 2005.
   
   
10. S. Dong and G.E. Karniadakis, "Dual-level parallelism  for high-order CFD methods", Parallel Computing, 30(1), pp. 1-20, 2004. (Ten most downloaded articles in Parallel Computing).
    
    
11. S. Dong and G.E. Karniadakis, ''Multilevel parallelization models in CFD,'' Journal of Aerospace Computing, Information and Communication, vol. 1, pp. 256-268, 2004.
    
    
12. J.S. Sobel, A.S. Forsberg, D.H. Laidlaw, R.C. Zelesnik, D.F. Keefe, I. Pivkin, G.E. Karniadakis, P. Richardson and S. Swartz, "Particle Flurries," IEEE Computer Graphics and Applications, . 24(2), 76-85, 2004.
    
    
13. S. Dong and G.E. Karniadakis, "P-refinement and P-threads," Comput. Methods Appl. Mech. Engrg.,  192, 2191-2201, 2003.
    
    
14. J. Xu, S. Dong, M.R. Maxey and G.E. Karniadakis, ''Direct numerical simulation of turbulent channel flow with bubbles,'' Contemporary Mathematics, Current Trends in Scientific Computing, Vol. 329, 347-354, American Mathematical Society, edited by Z. Chen, R. Glowinski and K. Li, 2003.

15. G.E. Karniadakis and R.M. Kirby, ''Parallel Scientific Computing in C$++$ and MPI,'' Cambridge University Press, 2003.

16. S. Dong and G.E. Karniadakis, ''Dual level parallelism for deterministic and stochastic CFD problems,'' Proceedings of Supercomputing 2002, Baltimore, November 2002.

17. S. Dong and G.E. Karniadakis, ''Dual-level parallelism for high-order CFD methods,'' Parallel Computing, 30(1), 1-20, January 2004.

18. R.M. Kirby, Y. Du, D. Lucor, X. Ma, G.-S. Karamanos and G.E. Karniadakis, ''Parallel DNS and LES of turbulence and flow-structure interactions,'' Proceedings of the DoD HPCMP Users Group Conference, June 5-8, 2000.
    
    
19. C. Evangelinos, S.J. Sherwin and G.E. Karniadakis, "Parallel DNS algorithms on unstructured grids,"Comp. Meth. Appl. Mech. Engr., 184, 401-425, 2000.
    
    
20. R.M. Kirby, I. Lomtev, C. Evangelinos, G.-S. Karamanos and G.E. Karniadakis, ''Parallel DNS of flow-structure interactions,'' Proceedings of the DoD HPCMP Users Group Conference, June 7-10, 1999.
    
    
    
21. G.-S. Karamanos, C. Evangelinos, R. Boes, R.M. Kirby and G.E. Karniadakis, ''DNS of turbulence on a PC/Linux cluster: Fact or fiction?,'' Proc. SuperComputing, 1999.
    
    
22. S.J. Sherwin, C. Evangelinos, H. Tufo and G.E. Karniadakis, ''Development of a parallel unstructured spectral/hp method for unsteady fluid dynamics,'' Proc. Parallel CFD'97, May 1997.
    
    
23. C. Evangelinos and G.E. Karniadakis, "Parallel CFD Benchmarks on Cray Computers," Parallel Algorithms and Applications, vol. 9, p. 273, 1996, also in Proc. Int. Conf. Parallel Algorithms,  October 1995, Wuhan, China (invited presentation).
    
    
24. C.H. Crawford, C. Evangelinos, D.J. Newman and G.E. Karniadakis, "Parallel  benchmarks of turbulence in complex geometries,'' Computers and Fluids, 25, 677, 1996,  also in Proc. Parallel CFD'95, June 26-29, 1995, Pasadena, CA.
    

     

25. C. Evangelinos and G.E. Karniadakis, ''Communication patterns and models in PRISM: A spectral element-Fourier parallel Navier-Stokes solver,'' Proc. Supercomputing, 1996. (finalist for best student paper)
    
    
26. G.E. Karniadakis and S.A. Orszag, ''Nodes, Modes, and Flow Codes,'' Physics Today, pp. 34-42, March 1993.
    
    
27. R.D. Henderson and G.E. Karniadakis, ''A hybrid spectral element-finite difference method for parallel computers,'' p. 221, Unstructured Scientific Computation on Scalable Multi- Processors, ed. P. Mehrotra, J. Saltz and R. Voigt, M.I.T. Press, 1992.
    
    
28. D. Chu, R.D. Henderson and G.E. Karniadakis, ''Parallel spectral element-Fourier simulation of turbulence over riblet-mounted surfaces,'' Theor. and Comput. Fluid Dynamics, vol. 3, p.219, 1992.
    
    
29. D. Chu, R.D. Henderson and G.E. Karniadakis, ''Parallel hybrid spectral element methods for incompressible flows,'' Proc. 4th Int. Conf. on CFD, Davis, 1991.
    
    
30. G.E. Karniadakis and S.A. Orszag, ''Parallel spectral computations of complex engineering flows,'' chapter 9 in Supercomputing in Engineering Analysis, New Generation Computing, ed. H. Adeli, 1990.
    
    
31. P. Fischer, L.W. Ho, G.E. Karniadakis, E.M. Ronquist and A.T. Patera, ''Recent advances in parallel spectral element simulation of unsteady incompressible flows,'' Comp. and Structures, vol. 30, p. 217, 1988.